3I3O

2.06 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD-acetone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

2.06 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD-acetone

Halavaty, A.S.Minasov, G.Skarina, T.Onopriyenko, O.Peterson, S.Savchenko, A.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Short chain dehydrogenase
A, B, C, D, E, F, G, H
291Bacillus anthracisN/A
Find proteins for Q81UV8 (Bacillus anthracis)
Go to UniProtKB:  Q81UV8
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, B, C, D, E, F, H
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
NAE
Query on NAE

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Download CCD File 
A, B, C, D, E, F, H
NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT
C24 H31 N7 O15 P2
SGHBFOOIAAJJMI-YDKVLQLQSA-N
 Ligand Interaction
CAC
Query on CAC

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
CACODYLATE ION
dimethylarsinate
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 131.757α = 90.00
b = 168.156β = 90.00
c = 107.194γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
BALBESphasing
HKL-2000data reduction
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description