3I3C

Crystal Structural of CBX5 Chromo Shadow Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.268 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structural of CBX5 Chromo Shadow Domain

Li, Z.Li, Y.Amaya, M.F.Edwards, A.M.Arrowsmith, C.H.Weigelt, J.Bountra, C.Bochkarev, A.Min, J.Ouyang, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Chromobox protein homolog 5A, B, C, D75Homo sapiensMutation(s): 0 
Gene Names: CBX5HP1A
Find proteins for P45973 (Homo sapiens)
Explore P45973 
Go to UniProtKB:  P45973
NIH Common Fund Data Resources
PHAROS  P45973
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.268 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.66α = 90
b = 126.587β = 90
c = 31.399γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-08-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description