3I2V | pdb_00003i2v

Crystal structure of human MOCS3 rhodanese-like domain

PDB DOI: https://doi.org/10.2210/pdb3I2V/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-06-29 Released: 2009-07-21
Deposition Author(s): Bacik, J.P., Walker, J.R., Lopez, L., Li, Y., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free:
0.204 (Depositor), 0.199 (DCC)
R-Value Work:
0.159 (Depositor), 0.156 (DCC)
R-Value Observed:
0.161 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the human MOCS3 rhodanese-like domain

Bacik, J.P., Walker, J.R., Lopez, L., Li, Y., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S.

To be published.

Macromolecule Content

Total Structure Weight: 14.22 kDa
Atom Count: 1,169
Modeled Residue Count: 124
Deposited Residue Count: 127
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenylyltransferase and sulfurtransferase MOCS3	A	127	Homo sapiens	Mutation(s): 0 Gene Names: MOCS3, MOCS3_HUMAN, UBA4 EC: 2.7.7 (PDB Primary Data), 2.8.1 (PDB Primary Data), 2.7.7.80 (UniProt), 2.8.1.11 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O95396 (Homo sapiens) Explore O95396 Go to UniProtKB: O95396
PHAROS: O95396 GTEx: ENSG00000124217
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O95396
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.204 (Depositor), 0.199 (DCC)
R-Value Work: 0.159 (Depositor), 0.156 (DCC)
R-Value Observed: 0.161 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.817	α = 90
b = 31.911	β = 110.16
c = 50.64	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-07-21

Deposition Author(s):

Arrowsmith, C.H.

Dhe-Paganon, S.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2009-07-21
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.