3I0T | pdb_00003i0t

Sulfur-SAD at long wavelength: Structure of BH3703 from Bacillus halodurans

PDB DOI: https://doi.org/10.2210/pdb3I0T/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Halalkalibacterium halodurans C-125
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-06-25 Released: 2009-07-14
Deposition Author(s): Ramagopal, U.A., Toro, R., Wasserman, S., Burley, S.K., Almo, S.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free:
0.238 (Depositor), 0.226 (DCC)
R-Value Work:
0.203 (Depositor), 0.196 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Sulfur-SAD at long wavelength: Structure of BH3703 from Bacillus halodurans

Ramagopal, U.A., Toro, R., Wasserman, S., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 43.89 kDa
Atom Count: 3,205
Modeled Residue Count: 341
Deposited Residue Count: 358
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BH3703 protein	A, B	179	Halalkalibacterium halodurans C-125	Mutation(s): 0 Gene Names: BH3703
UniProt
Find proteins for Q9K6M5 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9K6M5 Go to UniProtKB: Q9K6M5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9K6M5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.238 (Depositor), 0.226 (DCC)
R-Value Work: 0.203 (Depositor), 0.196 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.469	α = 90
b = 81.474	β = 90
c = 92.071	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
HKL-2000	data reduction
SHELXD	phasing
SHELXE	model building

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-07-14

Deposition Author(s):

Ramagopal, U.A.

Revision History (Full details and data files)

Version 1.0: 2009-07-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.