3HYM

Insights into Anaphase Promoting Complex TPR subdomain assembly from a CDC26-APC6 structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Insights into anaphase promoting complex TPR subdomain assembly from a CDC26-APC6 structure.

Wang, J.Dye, B.T.Rajashankar, K.R.Kurinov, I.Schulman, B.A.

(2009) Nat Struct Mol Biol 16: 987-989

  • DOI: 10.1038/nsmb.1645
  • Primary Citation of Related Structures:  
    3HYM

  • PubMed Abstract: 
  • The multisubunit anaphase promoting complex (APC) is an essential cell-cycle regulator. Although CDC26 is known to have a role in APC assembly, its molecular function has remained unclear. Biophysical, structural and genetic studies presented here re ...

    The multisubunit anaphase promoting complex (APC) is an essential cell-cycle regulator. Although CDC26 is known to have a role in APC assembly, its molecular function has remained unclear. Biophysical, structural and genetic studies presented here reveal that CDC26 stabilizes the structure of APC6, a core TPR protein required for APC integrity. Notably, CDC26-APC6 association involves an intermolecular TPR mimic composed of one helix from each protein.


    Organizational Affiliation

    Departments of Structural Biology and Genetics/Tumor Cell Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC26ACEGIK29Homo sapiensMutation(s): 0 
Gene Names: CDC26C9orf17ANAPC12
Find proteins for Q8NHZ8 (Homo sapiens)
Explore Q8NHZ8 
Go to UniProtKB:  Q8NHZ8
NIH Common Fund Data Resources
PHAROS  Q8NHZ8
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Cell division cycle protein 16 homologBDFHJL330Homo sapiensMutation(s): 0 
Gene Names: CDC16ANAPC6
Find proteins for Q13042 (Homo sapiens)
Explore Q13042 
Go to UniProtKB:  Q13042
NIH Common Fund Data Resources
PHAROS  Q13042
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,C,E,G,I,KL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 301.897α = 90
b = 301.897β = 90
c = 80.168γ = 120
Software Package:
Software NamePurpose
SHELXSphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance