3HWN

CATHEPSIN L with AZ13010160


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.347 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.252 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Design of selective Cathepsin inhibitors

Bethel, P.A.Gerhardt, S.Jones, E.V.Kenny, P.W.Karoutchi, G.I.Morley, A.D.Oldham, K.Rankine, N.Augustin, M.Krapp, S.Simader, H.Steinbacher, S.

(2009) Bioorg Med Chem Lett 19: 4622-4625

  • DOI: 10.1016/j.bmcl.2009.06.090
  • Primary Citation of Related Structures:  
    3HWN

  • PubMed Abstract: 
  • A number of molecular recognition features have been exploited in structure-based design of selective Cathepsin inhibitors.


    Organizational Affiliation

    RIRA, AstraZeneca, Mereside, Alderley Park, Macclesfield SK10 4TG, UK.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cathepsin L1ABCD258Homo sapiensMutation(s): 1 
Gene Names: CTSL1CTSL
EC: 3.4.22.15
Find proteins for P07711 (Homo sapiens)
Explore P07711 
Go to UniProtKB:  P07711
NIH Common Fund Data Resources
PHAROS  P07711
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BD3
Query on BD3

Download CCD File 
A, B, C, D
Nalpha-[(3-tert-butyl-1-methyl-1H-pyrazol-5-yl)carbonyl]-N-[(2E)-2-iminoethyl]-3-{5-[(Z)-iminomethyl]-1,3,4-oxadiazol-2-yl}-L-phenylalaninamide
C23 H28 N8 O3
TVWDSIGUOHNHHP-TTWIPJPDSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
BD3IC50 :  2   nM  PDBBind
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.347 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.252 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.07α = 105.34
b = 62.8β = 94.04
c = 67.97γ = 115.26
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2009-06-18 
  • Released Date: 2009-09-15 
  • Deposition Author(s): Kenny, P., Morley, A.

Revision History 

  • Version 1.0: 2009-09-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Advisory, Refinement description