3HWN

CATHEPSIN L with AZ13010160


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.347 
  • R-Value Work: 0.250 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Design of selective Cathepsin inhibitors

Bethel, P.A.Gerhardt, S.Jones, E.V.Kenny, P.W.Karoutchi, G.I.Morley, A.D.Oldham, K.Rankine, N.Augustin, M.Krapp, S.Simader, H.Steinbacher, S.

(2009) Bioorg.Med.Chem.Lett. 19: 4622-4625

  • DOI: 10.1016/j.bmcl.2009.06.090

  • PubMed Abstract: 
  • A number of molecular recognition features have been exploited in structure-based design of selective Cathepsin inhibitors.

    A number of molecular recognition features have been exploited in structure-based design of selective Cathepsin inhibitors.


    Organizational Affiliation

    RIRA, AstraZeneca, Mereside, Alderley Park, Macclesfield SK10 4TG, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cathepsin L1
A, B, C, D
258Homo sapiensMutation(s): 1 
Gene Names: CTSL (CTSL1)
EC: 3.4.22.15
Find proteins for P07711 (Homo sapiens)
Go to Gene View: CTSL
Go to UniProtKB:  P07711
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BD3
Query on BD3

Download SDF File 
Download CCD File 
A, B, C, D
Nalpha-[(3-tert-butyl-1-methyl-1H-pyrazol-5-yl)carbonyl]-N-[(2E)-2-iminoethyl]-3-{5-[(Z)-iminomethyl]-1,3,4-oxadiazol-2-yl}-L-phenylalaninamide
C23 H28 N8 O3
TVWDSIGUOHNHHP-TTWIPJPDSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
BD3IC50: 2 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.347 
  • R-Value Work: 0.250 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 57.070α = 105.34
b = 62.800β = 94.04
c = 67.970γ = 115.26
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2009-06-18 
  • Released Date: 2009-09-15 
  • Deposition Author(s): Kenny, P., Morley, A.

Revision History 

  • Version 1.0: 2009-09-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Advisory, Refinement description