3HUR

Crystal structure of alanine racemase from Oenococcus oeni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of alanine racemase from Oenococcus oeni

Bonanno, J.B.Rutter, M.Bain, K.T.Hu, S.Romero, R.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alanine racemase
A
395Oenococcus oeni (strain ATCC BAA-331 / PSU-1)Mutation(s): 0 
EC: 5.1.1.1
Find proteins for Q04DI1 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1))
Go to UniProtKB:  Q04DI1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.219 
  • Space Group: F 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 118.499α = 90.00
b = 130.549β = 90.00
c = 189.441γ = 90.00
Software Package:
Software NamePurpose
MAR345data collection
SHELXCDphasing
PDB_EXTRACTdata extraction
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-07-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description
  • Version 1.3: 2018-11-21
    Type: Data collection, Structure summary