3HTY

Crystal structure of a lipocalin-like protein (BT_0869) from Bacteroides thetaiotaomicron VPI-5482 at 1.95 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of hypothetical protein BT_0869 from Bacteroides thetaiotaomicron VPI-5482 (NP_809782.1) at 1.95 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
hypothetical protein BT_0869
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
94Bacteroides thetaiotaomicron VPI-5482Mutation(s): 0 
Gene Names: BT_0869NP_809782.1
UniProt
Find proteins for Q8A9E6 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50))
Explore Q8A9E6 
Go to UniProtKB:  Q8A9E6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8A9E6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth D],
BB [auth K],
CB [auth K],
DB [auth K],
EA [auth F],
AA [auth D],
BB [auth K],
CB [auth K],
DB [auth K],
EA [auth F],
FA [auth F],
GB [auth L],
LA [auth G],
LB [auth N],
MB [auth N],
NA [auth H],
OA [auth H],
QB [auth O],
RB [auth O],
SA [auth I],
TA [auth I],
V [auth C],
VB [auth P],
WA [auth J]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AB [auth J],
BA [auth D],
CA [auth E],
DA [auth E],
EB [auth K],
AB [auth J],
BA [auth D],
CA [auth E],
DA [auth E],
EB [auth K],
FB [auth K],
GA [auth F],
HA [auth F],
HB [auth L],
IA [auth F],
IB [auth L],
JA [auth F],
JB [auth M],
KA [auth F],
KB [auth M],
MA [auth G],
NB [auth N],
OB [auth N],
PA [auth H],
PB [auth N],
Q [auth A],
QA [auth H],
R [auth A],
RA [auth H],
S [auth B],
SB [auth O],
T [auth B],
TB [auth O],
U [auth B],
UA [auth I],
UB [auth O],
VA [auth I],
W [auth C],
WB [auth P],
X [auth C],
XA [auth J],
Y [auth C],
YA [auth J],
Z [auth C],
ZA [auth J]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.51α = 90
b = 125.51β = 90
c = 181.45γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDphasing
autoSHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2014-12-24
    Changes: Structure summary
  • Version 1.3: 2017-10-25
    Changes: Author supporting evidence, Refinement description
  • Version 1.4: 2019-07-24
    Changes: Data collection, Derived calculations, Refinement description