3HN2 | pdb_00003hn2

Crystal structure of 2-dehydropantoate 2-reductase FROM Geobacter metallireducens GS-15

PDB DOI: https://doi.org/10.2210/pdb3HN2/pdb

Classification: OXIDOREDUCTASE
Organism(s): Geobacter metallireducens GS-15
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-05-29 Released: 2009-06-09
Deposition Author(s): Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.292 (Depositor), 0.292 (DCC)
R-Value Work:
0.243 (Depositor), 0.243 (DCC)
R-Value Observed:
0.244 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3HN2

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of 2-dehydropantoate 2-reductase FROM Geobacter metallireducens

Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 137.41 kDa
Atom Count: 9,315
Modeled Residue Count: 1,207
Deposited Residue Count: 1,248
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-dehydropantoate 2-reductase	A, B, C, D	312	Geobacter metallireducens GS-15	Mutation(s): 0 Gene Names: Gmet_2643 EC: 1.1.1.169
UniProt
Find proteins for Q39SB2 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)) Explore Q39SB2 Go to UniProtKB: Q39SB2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q39SB2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.292 (Depositor), 0.292 (DCC)
R-Value Work: 0.243 (Depositor), 0.243 (DCC)
R-Value Observed: 0.244 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.318	α = 90
b = 82.179	β = 90
c = 201.291	γ = 90

Software Package:

Software Name	Purpose
RESOLVE	model building
REFMAC	refinement
DENZO	data reduction
HKL-2000	data scaling
SHELXDE	phasing
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-06-09

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-06-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance
Version 1.2: 2018-11-21
Changes: Data collection, Structure summary
Version 1.3: 2018-11-28
Changes: Data collection, Refinement description
Version 1.4: 2021-02-10
Changes: Database references, Structure summary
Version 1.5: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.