3HM5

SANT domain of human DNA methyltransferase 1 associated protein 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

SANT domain of human DNA methyltransferase 1 associated protein 1

Dombrovski, L.Tempel, W.Amaya, M.F.Tong, Y.Ni, S.Bountra, C.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Bochkarev, A.Min, J.Park, H.Wu, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA methyltransferase 1-associated protein 1
A
93Homo sapiensMutation(s): 0 
Gene Names: DMAP1 (KIAA1425)
Find proteins for Q9NPF5 (Homo sapiens)
Go to Gene View: DMAP1
Go to UniProtKB:  Q9NPF5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.223 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 36.523α = 90.00
b = 36.523β = 90.00
c = 230.506γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data reduction
SCALEPACKdata scaling
REFMACrefinement
DENZOdata reduction
SHELXphasing
RESOLVEphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-06-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description