3HLT

The crystal structure of human haloacid dehalogenase-like hydrolase domain containing 2 (HDHD2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of human haloacid dehalogenase-like hydrolase domain containing 2 (HDHD2)

Ugochukwu, E.Shafqat, N.Yue, W.W.Cocking, R.Bray, J.E.Muniz, J.R.C.Krojer, T.von Delft, F.Bountra, C.Arrowsmith, C.H.Weigelt, J.Edwards, A.Oppermann, U.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HDHD2
A, C
266Homo sapiensMutation(s): 0 
Gene Names: HDHD2
Find proteins for Q9H0R4 (Homo sapiens)
Go to Gene View: HDHD2
Go to UniProtKB:  Q9H0R4
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, C
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.213 
  • Space Group: P 21 2 21
Unit Cell:
Length (Å)Angle (°)
a = 68.940α = 90.00
b = 77.680β = 90.00
c = 103.990γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
MAR345data collection
PHASERphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description