3HBC

Crystal Structure of Choloylglycine Hydrolase from Bacteroides thetaiotaomicron VPI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.269 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Choloylglycine Hydrolase from Bacteroides thetaiotaomicron VPI

Kim, Y.Bigelow, L.Buck, K.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Choloylglycine hydrolase
A
320Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)Mutation(s): 0 
Find proteins for Q8A600 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482))
Go to UniProtKB:  Q8A600
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.269 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.191 
  • Space Group: F 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 74.281α = 90.00
b = 135.208β = 90.00
c = 167.589γ = 90.00
Software Package:
Software NamePurpose
DMphasing
Cootmodel building
RESOLVEphasing
SHELXDphasing
SBC-Collectdata collection
HKL-3000data collection
PHENIXrefinement
HKL-3000data scaling
HKL-3000phasing
MLPHAREphasing
DMmodel building
RESOLVEmodel building
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-06-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance