3H1Q | pdb_00003h1q

Crystal structure of ethanolamine utilization protein EutJ from Carboxydothermus hydrogenoformans

• PDB DOI: https://doi.org/10.2210/pdb3H1Q/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Carboxydothermus hydrogenoformans Z-2901
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-04-13 Released: 2009-05-19 
• Deposition Author(s): Chang, C., Tesar, C., Jedrzejczak, R., Kinney, J., Kerfeld, C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 
  0.278 (Depositor), 0.276 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.228 (DCC) 
• R-Value Observed: 
  0.229 (Depositor) 

Literature

Crystal structure of ethanolamine utilization protein EutJ from Carboxydothermus hydrogenoformans

Chang, C., Tesar, C., Jedrzejczak, R., Kinney, J., Kerfeld, C., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 59.23 kDa 
• Atom Count: 3,978 
• Modeled Residue Count: 540 
• Deposited Residue Count: 544 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ethanolamine utilization protein EutJ	A, B	272	Carboxydothermus hydrogenoformans Z-2901	Mutation(s): 0  Gene Names: eutJ, CHY_0686
UniProt
Find proteins for Q3AE93 (Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)) Explore Q3AE93  Go to UniProtKB:  Q3AE93

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ATP	C [auth A], D [auth B]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free:  0.278 (Depositor), 0.276 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.228 (DCC) 
• R-Value Observed: 0.229 (Depositor) 

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.912	α = 90
b = 128.912	β = 90
c = 104.922	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
MLPHARE	phasing
DM	model building
SHELXD	phasing
RESOLVE	model building
ARP/wARP	model building
Coot	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-05-19 
Deposition Author(s): Chang, C., Tesar, C., Jedrzejczak, R., Kinney, J., Kerfeld, C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-05-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Structure summary