3H0K | pdb_00003h0k

Crystal structure of an adenylated kinase related protein from sulfolobus solfataricus to 3.25a

• PDB DOI: https://doi.org/10.2210/pdb3H0K/pdb

• Classification: structural genomics, unknown function
• Organism(s): Saccharolobus solfataricus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-04-09 Released: 2009-04-21 
• Deposition Author(s): Stein, A.J., Sather, A., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.25 Å
• R-Value Free: 
  0.294 (Depositor), 0.301 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.225 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Literature

Crystal structure of an adenylated kinase related protein from sulfolobus solfataricus to 3.25a

Stein, A.J., Sather, A., Abdullah, J., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 41.08 kDa 
• Atom Count: 2,536 
• Modeled Residue Count: 340 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0200 protein SSO1041	A, B	178	Saccharolobus solfataricus	Mutation(s): 0  Gene Names: SSO1041
UniProt
Find proteins for Q97Z90 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97Z90  Go to UniProtKB:  Q97Z90

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.25 Å
• R-Value Free:  0.294 (Depositor), 0.301 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.225 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.418	α = 90
b = 65.418	β = 90
c = 205.437	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-04-21 
Deposition Author(s): Stein, A.J., Sather, A., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-04-21
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Refinement description, Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations