3H0J

Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in complex with compound 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of small molecule isozyme non-specific inhibitors of mammalian acetyl-CoA carboxylase 1 and 2.

Corbett, J.W.Freeman-Cook, K.D.Elliott, R.Vajdos, F.Rajamohan, F.Kohls, D.Marr, E.Zhang, H.Tong, L.Tu, M.Murdande, S.Doran, S.D.Houser, J.A.Song, W.Jones, C.J.Coffey, S.B.Buzon, L.Minich, M.L.Dirico, K.J.Tapley, S.McPherson, R.K.Sugarman, E.Harwood, H.J.Esler, W.

(2010) Bioorg.Med.Chem.Lett. 20: 2383-2388

  • DOI: 10.1016/j.bmcl.2009.04.091
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Screening Pfizer's compound library resulted in the identification of weak acetyl-CoA carboxylase inhibitors, from which were obtained rACC1 CT-domain co-crystal structures. Utilizing HTS hits and structure-based drug discovery, a more rigid inhibito ...

    Screening Pfizer's compound library resulted in the identification of weak acetyl-CoA carboxylase inhibitors, from which were obtained rACC1 CT-domain co-crystal structures. Utilizing HTS hits and structure-based drug discovery, a more rigid inhibitor was designed and led to the discovery of sub-micromolar, spirochromanone non-specific ACC inhibitors. Low nanomolar, non-specific ACC-isozyme inhibitors that exhibited good rat pharmacokinetics were obtained from this chemotype.


    Organizational Affiliation

    Pfizer Global Research and Development, Eastern Point Road, Groton, CT 06340, USA. jmc1983mac@gmail.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Acetyl-CoA carboxylase
A, B, C
769Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ACC1 (ABP2, FAS3, MTR7)
EC: 6.4.1.2
Find proteins for Q00955 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q00955
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B36
Query on B36

Download SDF File 
Download CCD File 
A, B, C
6-{[1-(anthracen-9-ylcarbonyl)piperidin-4-yl]methyl}-2-methylquinoline
Anthracen-9-yl-[4-(2-methyl-quinolin-6-ylmethyl)-piperidin-1-yl]-methanon
C31 H28 N2 O
FVPWEZQBGAOBRM-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
B36IC50: 325 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.228 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 246.736α = 90.00
b = 122.865β = 93.92
c = 145.885γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
d*TREKdata scaling
CNSrefinement
d*TREKdata processing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2009-04-09 
  • Released Date: 2010-04-07 
  • Deposition Author(s): Zhang, H., Tong, L.

Revision History 

  • Version 1.0: 2010-04-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance