The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3
Fan, Y., Marshall, N., Keigher, L., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
27kDa outer membrane protein | A, B, C, D | 175 | Ruegeria pomeroyi DSS-3 | Mutation(s): 0  Gene Names: SPOA0362 | ![]() |
UniProt | |||||
Find proteins for Q5LKL9 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LKL9  Go to UniProtKB:  Q5LKL9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5LKL9 | ||||
Protein Feature ViewExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], I [auth B], J [auth B], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | Ligand Interaction | ||
EDO Query on EDO | H [auth A], L [auth B], Q [auth C], R [auth C], X [auth D], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.836 | α = 90 |
b = 91.7 | β = 120 |
c = 67.911 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
SHELXD | phasing |
MLPHARE | phasing |
ARP/wARP | model building |
HKL-3000 | phasing |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |