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Download EndnoteThe crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3
Fan, Y., Marshall, N., Keigher, L., Joachimiak, A.To be published.
3GYK
The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3
- DOI: 10.2210/pdb3GYK/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
- Expression System: Escherichia coli
- Deposited: 2009-04-03 Released: 2009-06-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.198
- R-Value Work: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| 27kDa outer membrane protein | A, B, C, D | 175 | Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) | Mutation(s): 0 |
Find proteins for Q5LKL9 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Go to UniProtKB: Q5LKL9 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C, D | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| EDO Query on EDO | A, B, C, D | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.198
- R-Value Work: 0.160
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 67.836 | α = 90.00 |
| b = 91.700 | β = 120.00 |
| c = 67.911 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| MLPHARE | phasing |
| HKL-3000 | data reduction |
| ARP/wARP | model building |
| SHELXD | phasing |
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2009-04-03
- Released Date: 2009-06-09
- Deposition Author(s): Fan, Y., Marshall, N., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
