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Download EndnoteCrystal Structure of Glycerate dehydrogenase related protein from Thermoplasma acidophilum
Syed Ibrahim, B., Kumaran, D., Burley, S.K., Swaminathan, S.To be published.
3GVX
Crystal structure of Glycerate dehydrogenase related protein from Thermoplasma acidophilum
- DOI: 10.2210/pdb3GVX/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
- Expression System: Escherichia coli
- Deposited: 2009-03-31 Released: 2009-04-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.261
- R-Value Work: 0.240
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Glycerate dehydrogenase related protein | A, B | 290 | Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) | Mutation(s): 0 |
Find proteins for Q9HJV5 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Go to UniProtKB: Q9HJV5 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| K Query on K | A, B | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.261
- R-Value Work: 0.240
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 66.512 | α = 90.00 |
| b = 77.842 | β = 90.00 |
| c = 152.654 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| CNS | refinement |
| SCALEPACK | data scaling |
| ARP/wARP | model building |
| SHELX | model building |
| SHELX | phasing |
| SHARP | phasing |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2009-03-31
- Released Date: 2009-04-28
- Deposition Author(s): Syed Ibrahim, B., Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History
- Version 1.0: 2009-04-28
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance
