3GVD

Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis

Kim, Y.Zhou, M.Peterson, S.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Serine acetyltransferaseABCDEFGHIJKL276Yersinia pestisMutation(s): 0 
Gene Names: cysEYPO0070
EC: 2.3.1.30
Find proteins for A0A384KMH6 (Yersinia pestis)
Explore A0A384KMH6 
Go to UniProtKB:  A0A384KMH6
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PG5
Query on PG5

Download CCD File 
C
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
C8 H18 O4
YFNKIDBQEZZDLK-UHFFFAOYSA-N
 Ligand Interaction
CYS
Query on CYS

Download CCD File 
A, B, D, E, G, H, I, J, L
CYSTEINE
C3 H7 N O2 S
XUJNEKJLAYXESH-REOHCLBHSA-N
 Ligand Interaction
PEG
Query on PEG

Download CCD File 
L
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A, F, H, K, L
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
B, E, F, H, J
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ACY
Query on ACY

Download CCD File 
A, C, J
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M33GVD Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.472α = 97.07
b = 81.228β = 95.32
c = 139.406γ = 94.72
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000data collection
MOLREPphasing
HKL-3000phasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance