3GR8

Structure of OYE from Geobacillus kaustophilus, orthorhombic crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Old Yellow Enzyme-Catalyzed Dehydrogenation of Saturated Ketones

Schittmayer, M.Zach, S.Winkler, M.Winkler, A.Macheroux, P.Uhl, M.K.Gruber, K.Kambourakis, S.Rozzell, D.Glieder, A.

(2011) ADV.SYNTH.CATAL. 353: 268-274


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADPH dehydrogenase
A, B
340Geobacillus kaustophilus (strain HTA426)Mutation(s): 0 
Gene Names: namA
EC: 1.6.99.1
Find proteins for Q5KXG9 (Geobacillus kaustophilus (strain HTA426))
Go to UniProtKB:  Q5KXG9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A, B
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
BTB
Query on BTB

Download SDF File 
Download CCD File 
A
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
BIS-TRIS BUFFER
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.188 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 82.394α = 90.00
b = 151.930β = 90.00
c = 143.744γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PDB_EXTRACTdata extraction
SCALAdata scaling
PHENIXrefinement
DENZOdata reduction
MAR345dtbdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2009-03-25 
  • Released Date: 2010-03-31 
  • Deposition Author(s): Uhl, M.K., Gruber, K.

Revision History 

  • Version 1.0: 2010-03-31
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2014-09-03
    Type: Database references