3GLK

The biotin carboxylase (BC) domain of human Acetyl-CoA Carboxylase 2 (ACC2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Synthesis and characterization of a BODIPY-labeled derivative of Soraphen A that binds to acetyl-CoA carboxylase.

Raymer, B.Kavana, M.Price, A.Wang, B.Corcoran, L.Kulathila, R.Groarke, J.Mann, T.

(2009) Bioorg.Med.Chem.Lett. 19: 2804-2807

  • DOI: 10.1016/j.bmcl.2009.03.107
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • BODIPY-labeled Soraphen A derivative 4 was synthesized and characterized as an acetyl-CoA carboxylase (ACC) binder. Biophysical measurements indicate that the molecule binds in the biotin carboxylase domain where Soraphen A has been shown to bind. Th ...

    BODIPY-labeled Soraphen A derivative 4 was synthesized and characterized as an acetyl-CoA carboxylase (ACC) binder. Biophysical measurements indicate that the molecule binds in the biotin carboxylase domain where Soraphen A has been shown to bind. The fluorescent label of the BODIPY can be used to biophysically identify a compound that binds to the Soraphen A site of the biotin carboxylase domain versus the carboxytransferase domain of ACC.


    Organizational Affiliation

    Novartis Institutes for BioMedical Research, Cambridge, MA 02139, United States. brian.raymer@novartis.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Acetyl-CoA carboxylase 2
A
540Homo sapiensMutation(s): 0 
Gene Names: ACACB (ACC2, ACCB)
EC: 6.4.1.2
Find proteins for O00763 (Homo sapiens)
Go to Gene View: ACACB
Go to UniProtKB:  O00763
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.212 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 97.536α = 90.00
b = 97.536β = 90.00
c = 127.157γ = 90.00
Software Package:
Software NamePurpose
CNXrefinement
CrystalCleardata collection
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-03-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2014-12-10
    Type: Database references