3GHD

Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain

Dong, A.Xu, X.Chruszcz, M.Brown, G.Proudfoot, M.Edwards, A.M.Joachimiak, A.Minor, W.Savchenko, A.Yaleunin, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain
A, B
70Pyrococcus furiosusMutation(s): 0 
UniProt
Find proteins for Q8TZN4 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Explore Q8TZN4 
Go to UniProtKB:  Q8TZN4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TZN4
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.153α = 90
b = 73.162β = 90
c = 35.264γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
Cootmodel building
HKL-2000data reduction
HKL-2000data scaling
RESOLVEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-31
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2012-04-04
    Changes: Structure summary
  • Version 1.3: 2018-01-24
    Changes: Database references
  • Version 1.4: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.5: 2024-11-20
    Changes: Data collection, Structure summary