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Download EndnoteCrystal structure of putative NAD(P)H:FMN oxidoreductase (NP_904626.1) from PORPHYROMONAS GINGIVALIS W83 at 1.70 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3GE5
Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution
- DOI: 10.2210/pdb3GE5/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
- Expression System: Escherichia coli
- Deposited: 2009-02-25 Released: 2009-03-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.172
- R-Value Work: 0.145
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| putative NAD(P)H:FMN oxidoreductase | A, B | 198 | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) | Mutation(s): 0 |
Find proteins for Q7MX99 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83)) Go to UniProtKB: Q7MX99 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| FMN Query on FMN | A, B | FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.172
- R-Value Work: 0.145
- Space Group: P 43 21 2
- Diffraction Data DOI:
10.18430/M33GE5 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 112.060 | α = 90.00 |
| b = 112.060 | β = 90.00 |
| c = 68.300 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELX | phasing |
| PHENIX | refinement |
| SHELXD | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| PDB_EXTRACT | data extraction |
| autoSHARP | phasing |
| XSCALE | data scaling |
| MolProbity | model building |
Entry History
Deposition Data
- Deposited Date: 2009-02-25
- Released Date: 2009-03-17
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2009-03-17
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
