3GBS | pdb_00003gbs

Crystal structure of Aspergillus oryzae cutinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.199 (Depositor), 0.200 (DCC) 
  • R-Value Work: 
    0.194 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 
    0.195 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3GBS

This is version 1.3 of the entry. See complete history

Literature

Structural and functional studies of Aspergillus oryzae cutinase: enhanced thermostability and hydrolytic activity of synthetic ester and polyester degradation.

Liu, Z.Gosser, Y.Baker, P.J.Ravee, Y.Lu, Z.Alemu, G.Li, H.Butterfoss, G.L.Kong, X.P.Gross, R.Montclare, J.K.

(2009) J Am Chem Soc 131: 15711-15716

  • DOI: https://doi.org/10.1021/ja9046697
  • Primary Citation Related Structures: 
    3GBS

  • PubMed Abstract: 

    Cutinases are responsible for hydrolysis of the protective cutin lipid polyester matrix in plants and thus have been exploited for hydrolysis of small molecule esters and polyesters. Here we explore the reactivity, stability, and structure of Aspergillus oryzae cutinase and compare it to the well-studied enzyme from Fusarium solani. Two critical differences are highlighted in the crystallographic analysis of the A. oryzae structure: (i) an additional disulfide bond and (ii) a topologically favored catalytic triad with a continuous and deep groove. These structural features of A. oryzae cutinase are proposed to result in an improved hydrolytic activity and altered substrate specificity profile, enhanced thermostability, and remarkable reactivity toward the degradation of the synthetic polyester polycaprolactone. The results presented here provide insight into engineering new cutinase-inspired biocatalysts with tailor-made properties.


  • Organizational Affiliation
    • Department of Chemical and Biological Sciences, Polytechnic Institute of New York University, Brooklyn, New York 11201, USA.

Macromolecule Content 

  • Total Structure Weight: 20.64 kDa 
  • Atom Count: 1,638 
  • Modeled Residue Count: 187 
  • Deposited Residue Count: 197 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cutinase 1197Aspergillus oryzaeMutation(s): 0 
Gene Names: AO090005000029cutL
EC: 3.1.1.74
Membrane Entity: Yes 
UniProt
Find proteins for P52956 (Aspergillus oryzae (strain ATCC 42149 / RIB 40))
Explore P52956 
Go to UniProtKB:  P52956
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52956
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.199 (Depositor), 0.200 (DCC) 
  • R-Value Work:  0.194 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 0.195 (Depositor) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.299α = 90
b = 45.299β = 90
c = 157.111γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-10-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-11-20
    Changes: Structure summary