3G17 | pdb_00003g17

Structure of putative 2-dehydropantoate 2-reductase from staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb3G17/pdb

Classification: structural genomics, unknown function
Organism(s): Staphylococcus aureus subsp. aureus Mu50
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-01-29 Released: 2009-03-24
Deposition Author(s): Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.260 (Depositor), 0.255 (DCC)
R-Value Work:
0.200 (Depositor), 0.198 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Structure of putative 2-dehydropantoate 2-reductase from staphylococcus aureus

Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 267.49 kDa
Atom Count: 18,687
Modeled Residue Count: 2,294
Deposited Residue Count: 2,352
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Similar to 2-dehydropantoate 2-reductase	A, B, C, D, E A, B, C, D, E, F, G, H	294	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0 Gene Names: SAV2600 EC: 1.1.1.169
UniProt
Find proteins for A0A0H3K174 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3K174 Go to UniProtKB: A0A0H3K174
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3K174
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.260 (Depositor), 0.255 (DCC)
R-Value Work: 0.200 (Depositor), 0.198 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.239	α = 103.66
b = 99.64	β = 105.23
c = 100.261	γ = 102.26

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction
SHELXD	phasing
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-03-24

Deposition Author(s):

Ramagopal, U.A.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-03-24
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2021-02-10
Changes: Database references, Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.