3G11

Structure of E. coli FabF(C163Q) in complex with dihydrophenyl platensimycin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Synthesis and biological evaluation of platensimycin analogs.

Shen, H.C.Ding, F.X.Singh, S.B.Parthasarathy, G.Soisson, S.M.Ha, S.N.Chen, X.Kodali, S.Wang, J.Dorso, K.Tata, J.R.Hammond, M.L.Maccoss, M.Colletti, S.L.

(2009) Bioorg.Med.Chem.Lett. 19: 1623-1627

  • DOI: 10.1016/j.bmcl.2009.02.006
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Platensimycin (1) displays antibacterial activity due to its inhibition of the elongation condensing enzyme (FabF), a novel mode of action that could potentially lead to a breakthrough in developing a new generation of antibiotics. The medicinal chem ...

    Platensimycin (1) displays antibacterial activity due to its inhibition of the elongation condensing enzyme (FabF), a novel mode of action that could potentially lead to a breakthrough in developing a new generation of antibiotics. The medicinal chemistry efforts were focused on the modification of the enone moiety of platensimycin and several analogs showed significant activity against FabF and possess antibacterial activity.


    Organizational Affiliation

    Departments of Medicinal Chemistry, Merck Research Laboratories, PO Box 2000, Rahway, NJ 07065-0900, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-oxoacyl-[acyl-carrier-protein] synthase 2
A
427Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: fabF (fabJ)
EC: 2.3.1.179
Find proteins for P0AAI5 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AAI5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
P9C
Query on P9C

Download SDF File 
Download CCD File 
A
3-({3-[(1S,4S,4aS,6S,7S,9S,9aR)-1,6-dimethyl-2-oxo-4-phenyldecahydro-6,9-epoxy-4a,7-methanobenzo[7]annulen-1-yl]propanoyl}amino)-2,4-dihydroxybenzoic acid
C30 H33 N O7
WDRJLSQVOAFEDA-ZORPPZNDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.166 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 76.283α = 90.00
b = 76.283β = 90.00
c = 146.579γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
ADSCdata collection
BUSTER-TNTrefinement
DENZOdata reduction
MOLREPphasing
SCALEPACKdata scaling
TNTrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-03-17
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description