3FXT

Crystal structure of the N-terminal domain of human NUDT6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoside diphosphate-linked moiety X motif 6
A, B, C, D, E, F, G, H
113Homo sapiensMutation(s): 0 
Gene Names: NUDT6 (FGF2AS)
EC: 3.6.1.-
Find proteins for P53370 (Homo sapiens)
Go to Gene View: NUDT6
Go to UniProtKB:  P53370
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B, C, D, E, F
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.201 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 185.800α = 90.00
b = 185.800β = 90.00
c = 129.200γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
autoSHARPphasing
ADSCdata collection
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-03-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance