3FX8

Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders.

Boer, D.R.Kerckhoffs, J.M.Parajo, Y.Pascu, M.Uson, I.Lincoln, P.Hannon, M.J.Coll, M.

(2010) Angew.Chem.Int.Ed.Engl. 49: 2336-2339


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
(5'-D(*CP*GP*TP*AP*CP*G)-3'C6N/A
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
5PM
Query on 5PM

Download SDF File 
Download CCD File 
C
4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}
1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether
C24 H18 N4 S
KHOHHSYBCGDFBZ-XUIWWLCJSA-N
 Ligand Interaction
FE2
Query on FE2

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Download CCD File 
C
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.187 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 49.249α = 90.00
b = 49.249β = 90.00
c = 49.249γ = 90.00
Software Package:
Software NamePurpose
SHELXL-97refinement
SHELXDEphasing
ProDCdata collection
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-03-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance