3FWO

The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.71 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.278 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for the antibacterial activity of the 12-membered-ring mono-sugar macrolide methymycin

Auerbach, T.Mermershtain, I.Bashan, A.Davidovich, C.Rozenberg, H.Sherman, D.H.Yonath, A.

(2009) Biotechnologia 1: 24-35


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
23S RIBOSOMAL RNAA2880Deinococcus radiodurans R1
Entity ID: 2
MoleculeChainsLengthOrganism
5S RIBOSOMAL RNAB118Deinococcus radiodurans R1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MT9
Query on MT9

Download SDF File 
Download CCD File 
A
(3R,4S,5S,7R,9E,11S,12R)-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-2,8-dioxooxacyclododec-9-en-4-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside
methymycin
C25 H43 N O7
HUKYPYXOBINMND-HYUJHOPRSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.71 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.278 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 172.499α = 90.00
b = 415.691β = 90.00
c = 701.729γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
MxCuBEdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-01-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2014-02-19
    Type: Database references, Structure summary