Download MendeleyCrystal structure of ferritin from Brucella melitensis
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3FVB
Crystal structure of ferritin (bacterioferritin) from Brucella melitensis
- PDB DOI: 10.2210/pdb3FVB/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-01-15 Released: 2009-02-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.215
- R-Value Work: 0.181
- R-Value Observed: 0.183
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bacterioferritin | A, B | 182 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: bfr, BAB2_0675 EC: 1.16.3.1 |  |
UniProt | |||||
Find proteins for Q2YKI4 (Brucella abortus (strain 2308)) Explore Q2YKI4 Go to UniProtKB: Q2YKI4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YKI4 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | Ligand Interaction | |
| IMD Query on IMD | L [auth A], R [auth B] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | Ligand Interaction | |
| FE Query on FE | D [auth A], E [auth A], M [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | J [auth A], K [auth A], Q [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| MG Query on MG | F [auth A], G [auth A], H [auth A], N [auth B], O [auth B], | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | I [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.215
- R-Value Work: 0.181
- R-Value Observed: 0.183
- Space Group: F 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 174.81 | α = 90 |
| b = 174.81 | β = 90 |
| c = 174.81 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-02-03 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-02-03
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
