3FPN

Crystal structure of UvrA-UvrB interaction domains


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair.

Pakotiprapha, D.Liu, Y.Verdine, G.L.Jeruzalmi, D.

(2009) J.Biol.Chem. 284: 12837-12844

  • DOI: 10.1074/jbc.M900571200

  • PubMed Abstract: 
  • Nucleotide excision repair is distinguished from other DNA repair pathways by its ability to process a wide range of structurally unrelated DNA lesions. In bacteria, damage recognition is achieved by the UvrA.UvrB ensemble. Here, we report the struct ...

    Nucleotide excision repair is distinguished from other DNA repair pathways by its ability to process a wide range of structurally unrelated DNA lesions. In bacteria, damage recognition is achieved by the UvrA.UvrB ensemble. Here, we report the structure of the complex between the interaction domains of UvrA and UvrB. These domains are necessary and sufficient for full-length UvrA and UvrB to associate and thereby form the DNA damage-sensing complex of bacterial nucleotide excision repair. The crystal structure and accompanying biochemical analyses suggest a model for the complete damage-sensing complex.


    Organizational Affiliation

    Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Geobacillus stearothermophilus UvrA interaction domain
A
119Geobacillus stearothermophilusMutation(s): 0 
Gene Names: uvrA
Find proteins for D0VX13 (Geobacillus stearothermophilus)
Go to UniProtKB:  D0VX13
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Geobacillus stearothermophilus UvrB interaction domain
B
106Geobacillus stearothermophilusMutation(s): 0 
Gene Names: uvrB
Find proteins for D0VX12 (Geobacillus stearothermophilus)
Go to UniProtKB:  D0VX12
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.230 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.491α = 90.00
b = 84.491β = 90.00
c = 60.874γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
REFMACrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-03-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description