3FMX

Crystal structure of Tartrate dehydrogenase from Pseudomonas putida complexed with NADH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.260 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural Characterization of Tartrate Dehydrogenase: a versatile enzyme catalyzing multiple reactions

Malik, R.Viola, R.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tartrate dehydrogenase/decarboxylase
X
364Pseudomonas putidaMutation(s): 1 
EC: 1.1.1.93, 4.1.1.73
Find proteins for Q51945 (Pseudomonas putida)
Go to UniProtKB:  Q51945
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAI
Query on NAI

Download SDF File 
Download CCD File 
X
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
 Ligand Interaction
NH4
Query on NH4

Download SDF File 
Download CCD File 
X
AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.260 
  • Space Group: P 6 2 2
Unit Cell:
Length (Å)Angle (°)
a = 182.906α = 90.00
b = 182.906β = 90.00
c = 66.980γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-12-22 
  • Released Date: 2010-01-12 
  • Deposition Author(s): Malik, R., Viola, R.E.

Revision History 

  • Version 1.0: 2010-01-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2013-11-06
    Type: Non-polymer description