3FMA

Crystal structure of the GYF domain of Smy2 in complex with a proline-rich peptide from BBP/ScSF1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

SMY2-type GYF domain recognition in mRNA surveillance complexes

Ash, M.R.Faelber, K.Kosslick, D.Albert, G.Roske, Y.Kofler, M.Schuemann, M.Krause, E.Freund, C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protein SMY2A, B, C, D, E100Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SMY2
Find proteins for P32909 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32909 
Go to UniProtKB:  P32909
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Branchpoint-bridging proteinF [auth L], G [auth M], H [auth N], I [auth O], J [auth P]11N/AMutation(s): 0 
Find proteins for Q12186 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12186 
Go to UniProtKB:  Q12186
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, EL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.4α = 90
b = 101.4β = 90
c = 150.7γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXCDphasing
SHELXEmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2008-12-19 
  • Released Date: 2009-12-22 
  • Deposition Author(s): Ash, M.R., Faelber, K.

Revision History  (Full details and data files)

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description