3FLE | pdb_00003fle

SE_1780 protein of unknown function from Staphylococcus epidermidis.

• PDB DOI: https://doi.org/10.2210/pdb3FLE/pdb

• Classification: structural genomics, unknown function
• Organism(s): Staphylococcus epidermidis ATCC 12228
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-12-18 Released: 2009-01-13 
• Deposition Author(s): Osipiuk, J., Hatzos, C., Clancy, S., Kim, Y., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free: 
  0.223 (Depositor), 0.204 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.177 (DCC) 
• R-Value Observed: 
  0.183 (Depositor) 

Literature

X-ray crystal structure of SE_1780 protein of unknown function from Staphylococcus epidermidis.

Osipiuk, J., Hatzos, C., Clancy, S., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 57.29 kDa 
• Atom Count: 4,344 
• Modeled Residue Count: 486 
• Deposited Residue Count: 498 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SE_1780 protein	A, B	249	Staphylococcus epidermidis ATCC 12228	Mutation(s): 0  Gene Names: SE_1780
UniProt
Find proteins for A0A0H2VHE3 (Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)) Explore A0A0H2VHE3  Go to UniProtKB:  A0A0H2VHE3

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free:  0.223 (Depositor), 0.204 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.177 (DCC) 
• R-Value Observed: 0.183 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.722	α = 90
b = 41.458	β = 90.06
c = 153.996	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-01-13 
Deposition Author(s): Osipiuk, J., Hatzos, C., Clancy, S., Kim, Y., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-01-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2017-11-01
  Changes: Advisory, Refinement description
• Version 1.3: 2024-11-27
  Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary