3FIF

Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.238 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.

Kuzin, A.P.Su, M.Seetharaman, J.Rossi, P.Chen, C.X.Jiang, M.Cunningham, K.Ma, L.Xiao, R.Liu, J.C.Baran, M.Swapna, G.V.T.Acton, T.B.Rost, B.Montelione, G.T.Hunt, J.F.Tong, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized lipoprotein ygdR
A, B, C, D, E, F, G, H
61Escherichia coli (strain K12)Gene Names: ygdR
Find proteins for P65294 (Escherichia coli (strain K12))
Go to UniProtKB:  P65294
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized ligand
Y
7N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.238 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 41.017α = 99.95
b = 41.056β = 102.33
c = 73.748γ = 104.40
Software Package:
Software NamePurpose
HKL-2000data reduction
SCALEPACKdata scaling
ADSCdata collection
REFMACrefinement
BALBESphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-01-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance