3FFL | pdb_00003ffl

Crystal Structure of the N-terminal Domain of Anaphase-Promoting Complex Subunit 7

• PDB DOI: https://doi.org/10.2210/pdb3FFL/pdb

• Classification: CELL CYCLE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2008-12-03 Released: 2008-12-16 
• Deposition Author(s): Han, D., Kim, K., Kim, Y., Kim, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.240 (Depositor), 0.266 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.264 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Literature

Crystal Structure of the N-terminal Domain of Anaphase-Promoting Complex Subunit 7

Han, D., Kim, K., Kim, Y., Kang, Y., Kim, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 74.86 kDa 
• Atom Count: 4,045 
• Modeled Residue Count: 500 
• Deposited Residue Count: 668 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Anaphase-promoting complex subunit 7	A, B, C, D	167	Homo sapiens	Mutation(s): 4  Gene Names: ANAPC7, APC7
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UJX3 (Homo sapiens) Explore Q9UJX3  Go to UniProtKB:  Q9UJX3
PHAROS:  Q9UJX3 GTEx:  ENSG00000196510

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.240 (Depositor), 0.266 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.264 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.493	α = 90
b = 64.076	β = 95.23
c = 81.597	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-12-16 
Deposition Author(s): Han, D., Kim, K., Kim, Y., Kim, Y.

Revision History  

• Version 1.0: 2008-12-16
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-04-11
  Changes: Refinement description
• Version 1.3: 2021-11-10
  Changes: Database references
• Version 1.4: 2024-05-29
  Changes: Data collection