3FER | pdb_00003fer

Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.

PDB DOI: https://doi.org/10.2210/pdb3FER/pdb

Classification: actin binding protein
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-11-30 Released: 2009-01-06
Deposition Author(s): Kuzin, A.P., Abashidze, M., Seetharaman, R., Shastry, R., Sahdev, S., Ciccosanti, C., Xiao, R., Everett, J.K., Huang, Y., Acton, T., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.259 (Depositor), 0.268 (DCC)
R-Value Work:
0.215 (Depositor), 0.224 (DCC)
R-Value Observed:
0.215 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.

Kuzin, A.P., Abashidze, M., Seetharaman, R., Shastry, R., Sahdev, S., Ciccosanti, C., Xiao, R., Everett, J.K., Huang, Y., Acton, T., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 122.28 kDa
Atom Count: 7,688
Modeled Residue Count: 927
Deposited Residue Count: 1,048
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Filamin-B	A, B, C, D	262	Homo sapiens	Mutation(s): 0 Gene Names: FLNB, FLN1L, FLN3, TABP, TAP
UniProt & NIH Common Fund Data Resources
Find proteins for O75369 (Homo sapiens) Explore O75369 Go to UniProtKB: O75369
PHAROS: O75369 GTEx: ENSG00000136068
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75369
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACY Query on ACY Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth B] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B]	E [auth B], F [auth C]	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain F [auth C] Interactions & Density Focus chain E [auth B] Focus chain F [auth C]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.259 (Depositor), 0.268 (DCC)
R-Value Work: 0.215 (Depositor), 0.224 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.847	α = 90
b = 82.41	β = 94.14
c = 132.251	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
BALBES	phasing
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-01-06

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2009-01-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.3: 2023-11-22
Changes: Data collection
Version 1.4: 2024-11-27
Changes: Structure summary