3FC6

hRXRalpha & mLXRalpha with an indole Pharmacophore, SB786875


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.063 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Synthesis and SAR of potent LXR agonists containing an indole pharmacophore.

Washburn, D.G.Hoang, T.H.Campobasso, N.Smallwood, A.Parks, D.J.Webb, C.L.Frank, K.A.Nord, M.Duraiswami, C.Evans, C.Jaye, M.Thompson, S.K.

(2009) Bioorg.Med.Chem.Lett. 19: 1097-1100

  • DOI: 10.1016/j.bmcl.2009.01.004

  • PubMed Abstract: 
  • A novel series of 1H-indol-1-yl tertiary amine LXR agonists has been designed. Compounds from this series were potent agonists with good rat pharmacokinetic parameters. In addition, the crystal structure of an LXR agonist bound to LXRalpha will be di ...

    A novel series of 1H-indol-1-yl tertiary amine LXR agonists has been designed. Compounds from this series were potent agonists with good rat pharmacokinetic parameters. In addition, the crystal structure of an LXR agonist bound to LXRalpha will be disclosed.


    Organizational Affiliation

    Department of Chemistry, Molecular Discovery Research, GlaxoSmithKline Pharmaceuticals, 709 Swedeland Road, King of Prussia, PA 19406, USA. dave.g.washburn@gsk.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinoic acid receptor RXR-alpha
A, C
242Homo sapiensMutation(s): 0 
Gene Names: RXRA (NR2B1)
Find proteins for P19793 (Homo sapiens)
Go to Gene View: RXRA
Go to UniProtKB:  P19793
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nr1h3 protein
B, D
266Mus musculusMutation(s): 0 
Gene Names: Nr1h3 (Lxra)
Find proteins for Q9Z0Y9 (Mus musculus)
Go to UniProtKB:  Q9Z0Y9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
REA
Query on REA

Download SDF File 
Download CCD File 
A, C
RETINOIC ACID
C20 H28 O2
SHGAZHPCJJPHSC-YCNIQYBTSA-N
 Ligand Interaction
LX2
Query on LX2

Download SDF File 
Download CCD File 
B, D
[4-(3-{[2-chloro-3-(trifluoromethyl)benzyl](2,2-diphenylethyl)amino}propoxy)-1H-indol-1-yl]acetic acid
C35 H32 Cl F3 N2 O3
RHWNXOWPCIQOAH-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
LX2EC50: 14 nM (95) BINDINGDB
REAIC50: >50000 nM (99) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.063 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.199 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 122.162α = 90.00
b = 90.029β = 111.92
c = 101.642γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MLPHAREphasing
HKL-2000data collection
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-02-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance