3F64

F17a-G lectin domain with bound GlcNAc(beta1-O)paranitrophenyl ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli

Lonardi, E.Moonens, K.Buts, L.de Boer, A.R.Olsson, J.D.M.Weiss, M.S.Fabre, E.Guerardel, Y.Deelder, A.M.Oscarson, S.Wuhrer, M.Bouckaert, J.

(2013) Biology 2: 894-917


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
F17a-G
A
177Escherichia coliMutation(s): 0 
Gene Names: f17aG
Find proteins for Q99003 (Escherichia coli)
Go to UniProtKB:  Q99003
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LEC
Query on LEC

Download SDF File 
Download CCD File 
A
N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide
C14 H18 N2 O8
OMRLTNCLYHKQCK-DHGKCCLASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.204 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 43.025α = 90.00
b = 43.025β = 90.00
c = 288.450γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
MAR345data collection
CNSphasing
DENZOdata reduction
CNSrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-11-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2013-08-28
    Type: Database references
  • Version 1.3: 2017-10-25
    Type: Refinement description