3F01

Crystal Structure of Synaptotagmin I C2A domain with Cu(II)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of synaptotagmin I C2A

Guo, F.Dakshinamurthy, R.Thallapuranam, S.K.K.Sakon, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Synaptotagmin-1
A
143Homo sapiensMutation(s): 0 
Gene Names: SYT1 (SVP65, SYT)
Find proteins for P21579 (Homo sapiens)
Go to Gene View: SYT1
Go to UniProtKB:  P21579
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.193 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.088α = 90.00
b = 38.561β = 97.35
c = 44.267γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
DENZOdata reduction
PHASERphasing
HKL-3000data reduction
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-10-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description