3ESM

Crystal structure of an uncharacterized protein from Nocardia farcinica reveals an immunoglobulin-like fold


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of an uncharacterized protein from Nocardia farcinica reveals an immunoglobulin-like fold

Bonanno, J.B.Freeman, J.Bain, K.T.Hu, S.Romero, R.Wasserman, S.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
uncharacterized protein
A
152Nocardia farcinica (strain IFM 10152)Mutation(s): 2 
Find proteins for Q5Z3N8 (Nocardia farcinica (strain IFM 10152))
Go to UniProtKB:  Q5Z3N8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
SNN
Query on SNN
A
L-PEPTIDE LINKINGC4 H6 N2 O2ASN
ACY
Query on ACY
A
NON-POLYMERC2 H4 O2

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.230 
  • Space Group: P 32 1 2
Unit Cell:
Length (Å)Angle (°)
a = 67.582α = 90.00
b = 67.582β = 90.00
c = 62.571γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
MAR345data collection
SHELXCDphasing
MOSFLMdata reduction
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Advisory, Refinement description
  • Version 1.3: 2018-11-14
    Type: Data collection, Structure summary