Download MendeleyX-ray crystal structure of N-acetylglucosamine-6-phosphate deacetylase from Vibrio cholerae.
Osipiuk, J., Maltseva, N., Stam, J., Anderson, W.F., Joachimiak, A.To be published.
3EGJ
N-acetylglucosamine-6-phosphate deacetylase from Vibrio cholerae.
- PDB DOI: https://doi.org/10.2210/pdb3EGJ/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio cholerae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-10 Released: 2008-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.247
- R-Value Work: 0.189
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-acetylglucosamine-6-phosphate deacetylase | A, B | 381 | Vibrio cholerae | Mutation(s): 0 Gene Names: nagA, VC_0994 EC: 3.5.1.25 |  |
UniProt | |||||
Find proteins for O32445 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore O32445 Go to UniProtKB: O32445 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O32445 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| NI Query on NI | C [auth A], E [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.247
- R-Value Work: 0.189
- R-Value Observed: 0.192
- Space Group: P 43 2 2
- Diffraction Data: https://doi.org/10.18430/M33EGJ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.001 | α = 90 |
| b = 77.001 | β = 90 |
| c = 282.549 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-23 Deposition Author(s): Osipiuk, J., Maltseva, N., Stam, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2008-09-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description
