3EG4 | pdb_00003eg4

Crystal structure of 2,3,4,5-Tetrahydropyridine-2-carboxylate N-Succinyltransferase from Brucella melitensis biovar abortus 2308

• PDB DOI: https://doi.org/10.2210/pdb3EG4/pdb

• Classification: TRANSFERASE
• Organism(s): Brucella suis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-09-10 Released: 2008-09-23 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 
  0.166 (Depositor) 
• R-Value Work: 
  0.130 (Depositor), 0.140 (DCC) 
• R-Value Observed: 
  0.132 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of 2,3,4,5-Tetrahydropyridine-2-carboxylate N-Succinyltransferase from Brucella melitensis biovar abortus 2308

SSGCID

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 33.02 kDa 
• Atom Count: 2,364 
• Modeled Residue Count: 279 
• Deposited Residue Count: 304 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	A	304	Brucella suis	Mutation(s): 0  Gene Names: dapD, BRA1028 EC: 2.3.1.117
UniProt
Find proteins for Q8FV25 (Brucella suis biovar 1 (strain 1330)) Explore Q8FV25  Go to UniProtKB:  Q8FV25

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free:  0.166 (Depositor) 
• R-Value Work:  0.130 (Depositor), 0.140 (DCC) 
• R-Value Observed: 0.132 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M33EG4

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.808	α = 90
b = 67.808	β = 90
c = 154.83	γ = 120

Software Package:

Software Name	Purpose
BOS	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-23 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2008-09-23
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description