3EDP | pdb_00003edp

The crystal structure of the protein lin2111 (functionally unknown) from Listeria innocua Clip11262

• PDB DOI: https://doi.org/10.2210/pdb3EDP/pdb

• Classification: structural genomics, unknown function
• Organism(s): Listeria innocua
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-09-03 Released: 2008-09-16 
• Deposition Author(s): Tan, K., Gu, M., Jaurequi, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 
  0.242 (Depositor), 0.237 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.196 (DCC) 
• R-Value Observed: 
  0.202 (Depositor) 

Literature

The crystal structure of the protein lin2111 (functionally unknown) from Listeria innocua Clip11262

Tan, K., Gu, M., Jaurequi, L., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 55.55 kDa 
• Atom Count: 3,797 
• Modeled Residue Count: 443 
• Deposited Residue Count: 472 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin2111 protein	A, B	236	Listeria innocua	Mutation(s): 0  Gene Names: lin2111
UniProt
Find proteins for Q92A11 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q92A11  Go to UniProtKB:  Q92A11

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], D [auth A], E [auth A], F [auth B], G [auth B], H [auth B], I [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free:  0.242 (Depositor), 0.237 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.196 (DCC) 
• R-Value Observed: 0.202 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.345	α = 90
b = 66.62	β = 95.03
c = 100.751	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
DM	model building
RESOLVE	model building
HKL-3000	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-16 
Deposition Author(s): Tan, K., Gu, M., Jaurequi, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2008-09-16
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary