3DOJ

Structure of Glyoxylate reductase 1 from Arabidopsis (AtGLYR1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.101 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Cytosolic NADPH-dependent Glyoxylate Reductase from Arabidopsis: Crystal Structure and Kinetic Characterization of Active Site Mutants

Hoover, G.Jorgensen, R.Merrill, A.R.Shelp, B.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dehydrogenase-like protein
A
310Arabidopsis thalianaMutation(s): 0 
Gene Names: GLYR1 (GR1)
EC: 1.1.1.79, 1.1.1.n11
Find proteins for Q9LSV0 (Arabidopsis thaliana)
Go to Gene View: GLYR1
Go to UniProtKB:  Q9LSV0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.101 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.172 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 156.543α = 90.00
b = 156.543β = 90.00
c = 75.467γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement
DENZOdata reduction
MOLREPphasing
SCALEPACKdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-07-04 
  • Released Date: 2009-07-07 
  • Deposition Author(s): Jorgensen, R.

Revision History 

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description