3DO7

X-ray structure of a NF-kB p52/RelB/DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

NF-kapppaB p52:RelB heterodimer uses different binding modes to recognize different kappaB DNA

Fusco, A.Huang, D.B.Miller, D.Vu, D.Ghosh, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Avian reticuloendotheliosis viral (V-rel) oncogene related B
A
296Mus musculusMutation(s): 0 
Gene Names: Relb
Find proteins for Q04863 (Mus musculus)
Go to UniProtKB:  Q04863
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Nuclear factor NF-kappa-B p100 subunit
B
293Homo sapiensMutation(s): 0 
Gene Names: NFKB2 (LYT10)
Find proteins for Q00653 (Homo sapiens)
Go to Gene View: NFKB2
Go to UniProtKB:  Q00653
Entity ID: 1
MoleculeChainsLengthOrganism
5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3'C,D,E11N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 77.640α = 90.00
b = 124.130β = 90.00
c = 189.590γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
HKL-2000data collection
HKL-2000data scaling
CNSrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-07-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance