3DO7

X-ray structure of a NF-kB p52/RelB/DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

NF-kapppaB p52:RelB heterodimer uses different binding modes to recognize different kappaB DNA

Fusco, A.Huang, D.B.Miller, D.Vu, D.Ghosh, G.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Avian reticuloendotheliosis viral (V-rel) oncogene related BA296Mus musculusMutation(s): 0 
Gene Names: Relb
Find proteins for Q04863 (Mus musculus)
Explore Q04863 
Go to UniProtKB:  Q04863
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear factor NF-kappa-B p100 subunitB293Homo sapiensMutation(s): 0 
Gene Names: NFKB2LYT10
Find proteins for Q00653 (Homo sapiens)
Explore Q00653 
Go to UniProtKB:  Q00653
NIH Common Fund Data Resources
PHAROS  Q00653
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3'C, D, E11N/A
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 3.05 Å
    • R-Value Free: 0.273 
    • R-Value Work: 0.230 
    • R-Value Observed: 0.230 
    • Space Group: C 2 2 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 77.64α = 90
    b = 124.13β = 90
    c = 189.59γ = 90
    Software Package:
    Software NamePurpose
    CNSrefinement
    HKL-2000data collection
    HKL-2000data reduction
    HKL-2000data scaling
    AMoREphasing

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2009-07-21
      Type: Initial release
    • Version 1.1: 2011-07-13
      Changes: Version format compliance