3DO7

X-ray structure of a NF-kB p52/RelB/DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

NF-kapppaB p52:RelB heterodimer uses different binding modes to recognize different kappaB DNA

Fusco, A.Huang, D.B.Miller, D.Vu, D.Ghosh, G.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Avian reticuloendotheliosis viral (V-rel) oncogene related BD [auth A]296Mus musculusMutation(s): 0 
Gene Names: Relb
UniProt
Find proteins for Q04863 (Mus musculus)
Explore Q04863 
Go to UniProtKB:  Q04863
Entity Groups  
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UniProt GroupQ04863
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear factor NF-kappa-B p100 subunitE [auth B]293Homo sapiensMutation(s): 0 
Gene Names: NFKB2LYT10
UniProt & NIH Common Fund Data Resources
Find proteins for Q00653 (Homo sapiens)
Explore Q00653 
Go to UniProtKB:  Q00653
PHAROS:  Q00653
GTEx:  ENSG00000077150 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ00653
Protein Feature View
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  • Reference Sequence

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Entity ID: 1
MoleculeChainsLengthOrganismImage
5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3'A [auth C],
B [auth D],
C [auth E]
11N/A
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.230 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.64α = 90
b = 124.13β = 90
c = 189.59γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance