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Download EndnoteThe crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1
Tan, K., Zhou, M., Gu, M., Joachimiak, A.To be published.
3DMN
The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1
- DOI: 10.2210/pdb3DMN/pdb
- Classification: structural genomics unknown function
- Organism(s): Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
- Expression System: Escherichia coli
- Deposited: 2008-07-01 Released: 2008-08-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.225
- R-Value Work: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative DNA helicase | A | 174 | Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) | Mutation(s): 0 EC: 3.6.4.12 |
Find proteins for F9UMB1 (Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)) Go to UniProtKB: F9UMB1 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | A | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | A | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.225
- R-Value Work: 0.191
- Space Group: P 65 2 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 99.292 | α = 90.00 |
| b = 99.292 | β = 90.00 |
| c = 72.365 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| MLPHARE | phasing |
| REFMAC | refinement |
| SHELXD | phasing |
| HKL-3000 | phasing |
| SBC-Collect | data collection |
| HKL-3000 | data scaling |
| HKL-3000 | data reduction |
| RESOLVE | phasing |
| DM | phasing |
Entry History
Deposition Data
- Deposited Date: 2008-07-01
- Released Date: 2008-08-26
- Deposition Author(s): Tan, K., Zhou, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History
- Version 1.0: 2008-08-26
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance
