3DL9

Crystal structure of CYP2R1 in complex with 1-alpha-hydroxy-vitamin D2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.721 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of CYP2R1 in complex with 1-alpha-hydroxy-vitamin D2.

Strushkevich, N.V.Tempel, W.Gilep, A.A.Loppnau, P.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Wilkstrom, M.Bochkarev, A.Park, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytochrome P450 2R1
A, B
479Homo sapiensMutation(s): 0 
Gene Names: CYP2R1
EC: 1.14.14.24
Find proteins for Q6VVX0 (Homo sapiens)
Go to Gene View: CYP2R1
Go to UniProtKB:  Q6VVX0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BCD
Query on BCD

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Download CCD File 
A, B
BETA-CYCLODEXTRIN
CYCLO-HEPTA-AMYLOSE
C42 H70 O35
WHGYBXFWUBPSRW-FOUAGVGXSA-N
 Ligand Interaction
V2H
Query on V2H

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Download CCD File 
A, B
(1S,3R,5Z,7E,22E)-9,10-secoergosta-5,7,10,22-tetraene-1,3-diol
1-alpha-hydroxy-vitamin D2
C28 H44 O2
HKXBNHCUPKIYDM-CGMHZMFXSA-N
 Ligand Interaction
HEM
Query on HEM

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Download CCD File 
A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.721 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.183 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 137.303α = 90.00
b = 163.040β = 90.00
c = 152.588γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
HKL-3000data reduction
REFMACphasing
DENZOdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-08-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description