3DKR

Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of esterase D from lactobacillus rhamnosus

Bennett, M.D.Delabre, M.-L.Holland, R.Norris, G.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Esterase D
A
251Lactobacillus rhamnosus HN001Mutation(s): 0 
Find proteins for B2CZF3 (Lactobacillus rhamnosus HN001)
Go to UniProtKB:  B2CZF3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.167 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 47.225α = 90.00
b = 47.225β = 90.00
c = 174.572γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
d*TREKdata reduction
d*TREKdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
CrystalCleardata collection
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-06-30
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance