Macromolecule Content

Total Structure Weight: 39.10 kDa
Atom Count: 2189
Residue Count: 262
Unique protein chains: 1

3DEU

Crystal structure of transcription regulatory protein slyA from Salmonella typhimurium in complex with salicylate ligands

DOI: 10.2210/pdb3DEU/pdb

Classification: TRANSCRIPTION REGULATOR
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-06-10 Released: 2008-06-24
Deposition Author(s): Le Trong, I., Brzovic, P.S., Fang, F.C., Libby, S.J., Stenkamp, R.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.259
R-Value Work: 0.228
R-Value Observed: 0.229

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of transcription regulatory protein slyA from Salmonella typhimurium in complex with salicylate ligands.

Brzovic, P.S., Le Trong, I., Navarre, W.W., Fang, F.C., Stenkamp, R.E., Libby, S.J.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator slyA	A, B	166	Salmonella enterica subsp. enterica serovar Typhimurium	Mutation(s): 0 Gene Names: slyA, STM1444
Find proteins for P40676 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P40676 Go to UniProtKB: P40676
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SAL Query on SAL Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [A] SDF format, chain E [A] SDF format, chain F [B] SDF format, chain G [B] SDF format, chain H [B] MOL2 format, chain C [A] MOL2 format, chain D [A] MOL2 format, chain E [A] MOL2 format, chain F [B] MOL2 format, chain G [B] MOL2 format, chain H [B]	A, B	2-HYDROXYBENZOIC ACID C₇ H₆ O₃ YGSDEFSMJLZEOE-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.259
R-Value Work: 0.228
R-Value Observed: 0.229
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.382	α = 90
b = 78.019	β = 90
c = 84.385	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2008-06-10
Released Date: 2008-06-24

Deposition Author(s):

Revision History

Version 1.0: 2008-06-24
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.