3DB5

Crystal structure of methyltransferase domain of human PR domain-containing protein 4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of methyltransferase domain of human PR domain-containing protein 4.

Zeng, H.Amaya, M.F.Loppnau, P.Bochkarev, A.Min, J.Plotnikov, A.N.Wu, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PR domain zinc finger protein 4AB151Homo sapiensMutation(s): 0 
Gene Names: PRDM4PFM1
EC: 2.1.1
Find proteins for Q9UKN5 (Homo sapiens)
Explore Q9UKN5 
Go to UniProtKB:  Q9UKN5
NIH Common Fund Data Resources
PHAROS  Q9UKN5
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.226 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.294α = 90
b = 107.294β = 90
c = 133.642γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXDphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-08-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description